Selected publications

1.  Nowak Joanna I., Olszewska Anna M., Wierzbicka Justyna M., Gebert Magdalena, Bartoszewski Rafał, Żmijewski Michał A.VDR and PDIA3 are essential for activation of calcium signaling and membrane response to 1,25(OH)2D3 in squamous cell carcinoma cells, Cells, 2024, 13, 1-14.
2. Nowak Joanna I., Olszewska Anna M., Wierzbicka Justyna M., Gebert Magdalena, Bartoszewski Rafał, Żmijewski Michał A. VDR and PDIA3 are essential for activation of calcium signaling and membrane response to 1,25(OH)2D3 in squamous cell carcinoma cells, Cells, 2024, 13, 1-14.
3. Sławski Jakub, Jaśkiewicz Maciej, Barton Anna, Kozioł Sylwia, Collawn James F, Bartoszewski Rafał, Regulation of the HIF switch in human endothelial and cancer cells, European Journal of Cell Biology, 2024, 103, 1-29.
4. Białek Wojciech, Collawn James F, Bartoszewski Rafał, Ubiquitin-dependent and independent proteasomal degradation in host-pathogen interactions, Molecules, 2023, 28, 1-20.
5. Sławski Jakub, Szewczyk Sebastian, Burdziński Gotard, Gibasiewicz Krzysztof, Grzyb Joanna, Time-resolved absorption measurements quantify the competition of energy and electron transfer between quantum dots and cytochrome c. Spectrochimica Acta. Part A: Molecular and Biomolecular Spectroscopy, 2023, 295, 1-11.
6. Gebert Magdalena, Sławski Jakub, Kalinowski Leszek, Collawn James F, Bartoszewski Rafał, The unfolded protein response: a double-edged sword for brain health, Antioxidants, 2023, 12, 1-26.
7. Sławski Jakub, Maciejewski Jan, Szukiewicz Rafał, Gieczewska Katarzyna, Grzyb Joanna, Quantum dots assembled with photosynthetic antennae on a carbon nanotube platform: a nanohybrid for the enhancement of light energy harvesting, ACS Omega, 2023, 8, 41991-42003.
8. Sławski Jakub, Walczewska-Szewc Katarzyna, Grzyb Joanna, Protein/protein and quantum dot/protein organization in sequential monolayer materials studied using resonance energy transfer, Applied Sciences, 2023, 13, 1-15.
9. Wawrzyniak Renata, Biesemans Margot, Kugacka-Dąbrowska Alicja, Lewicka Ewa, Bartoszewski Rafał, Markuszewski Michał J. Plasma untargeted metabolomics with proteinase K discloses phospholipid signature associated with pulmonary arterial hypertension. Scientific Reports, 2023, 13, 1-11.
10. Macioszek Szymon, Dudzik Danuta, Bartoszewski Rafał, Stokowy Tomasz, Lambrechts Diether, Boeckx Bram, Wozniak Agnieszka, Schöffski Patrick, Markuszewski Michał J.Metabolomic and transcriptomic response to imatinib treatment of gastrointestinal stromal tumour in xenograft-bearing mice, Translational Oncology, 2023, 30, 1-10.
11. Gebert Magdalena, Bartoszewska Sylwia, Opaliński Łukasz, Collawn James F, Bartoszewski Rafał, IRE1-mediated degradation of pre-miR-301a promotes apoptosis through upregulation of GADD45A, Cell Communication and Signaling, 2023, 21, 1-20.
12. Bartoszewska Sylwia, Sławski Jakub, Collawn James F, Bartoszewski Rafał,HIF-1-induced hsa-miR-429: understanding its direct targets as the key to developing cancer diagnostics and therapies, Cancers, 2023, 15, 1-22.
13. Jaśkiewicz Maciej, Moszyńska Adrianna, Gebert Magdalena, Collawn James F, Bartoszewski Rafał,EPAS1 resistance to miRNA-based regulation contributes to prolonged expression of HIF-2 during hypoxia in human endothelial cells, Gene, 2023, 868, 1-8.
14. Bartoszewska Sylwia, Sławski Jakub, Collawn James F, Bartoszewski Rafał, Dual RNase activity of IRE1 as a target for anticancer therapies, Journal of Cell Communication and Signaling, 2023, 17, 1145-1161.
15. Rydzy Małgorzata, Kolesiński Piotr, Szczepaniak Andrzej, Grzyb Joanna, DnaK and DnaJ proteins from Hsp70/40 family are involved in Rubisco biosynthesis in Synechocystis sp. PCC6803 and sustain the enzyme assembly in a heterologous system, BMC Plant Biology, 2023, 23, 1-14.
16. Wu Ambroise, Mazurkiewicz Ewa, Donizy Piotr, Kotowski Krzysztof, Pieniążek Małgorzata, Mazur Antonina, Czogalla Aleksander, Trombik Tomasz, ABCA1 transporter promotes the motility of human melanoma cells by modulating their plasma membrane organization, Biological Research, 2023, 59, 1-21
17. Jaśkiewicz Maciej, Moszyńska Adrianna, Króliczewski Jarosław, Cabaj Aleksandra, Bartoszewska Sylwia, Charzyńska Agata, Gebert Magdalena, Dąbrowski Michał, Collawn James F, Bartoszewski Rafał, The transition from HIF-1 to HIF-2 during prolonged hypoxia results from reactivation of PHDs and HIF1A mRNA instability, Cellular and Molecular Biology Letters, 2022, 27, 1-19.
18. Bartoszewska Sylwia, Collawn James F, Bartoszewski Rafał, The role of the hypoxia-related unfolded protein response (UPR) in the tumor microenvironment
    Cancers, 2022, 14, 1-24.
19. Wójtowicz Karolina, Antoniak Magda A., Trojnar Martyna, Nyk Marcin, Trombik Tomasz, Grzyb Joanna, QD:Puf nanohybrids are compatible with studies in cells
    Nanomaterials, 2022, 12, 1-13.
20. Gieczewska Katarzyna, Myśliwa-Kurdziel Beata, Grzyb Joanna, Photosynthetic reactions: from molecules to function, and from simple models to complex systems
    International Journal of Molecular Sciences, 2022, 23, 1-3.
21. Sławski Jakub, Grzyb Joanna, Fluorescence-based techniques to assess biomolecular structure and dynamics in: Advanced Spectroscopic Methods to Study Biomolecular Structure and Dynamics / red.Prakash Saudagar, Timir Tripathi, Academic Press, Oxford, 2022, 37-76.
22. Rydzy Małgorzata, Tracz Michał, Kolesiński Piotr, Szczepaniak Andrzej, Białka chaperonowe zaangażowane w proces biosyntezy Rubisco, Postępy Biochemii, 2022, 68, 149-160.
23. Bogusławska Dżamila M., Skulski Michał, Bartoszewski Rafał, Machnicka Beata, Heger Elżbieta, Kuliczkowski Kazimierz, Sikorski Aleksander F. A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5′-nucleotidase deficiency, Cellular and Molecular Biology Letters, 2022, 27, 1-26.
24. Agnieszka Biernatowska, Karolina Wójtowicz, Tomasz Trombik, Aleksander F. Sikorski, Aleksander Czogalla (2022) MPP1 Determines the Mobility of Flotillins and Controls the Confinement of Raft-Associated Molecules. Cells 11, 311. 
25. Joanna Grzyb, Katarzyna Walczewska-Szewc, Jakub Sławski, Martyna Trojnar (2021) Quantum dot clusters as self-assembled antennae with phycocyanine and phycobilisomes as energy acceptors. Phys. Chem. Chem. Phys., 23, 24505-24517
26. Joanna Wójtowicz, Joanna Grzyb, Joanna Szach, Radosław Mazur, Katarzyna B Gieczewska (2021) Bean and Pea Plastoglobules Change in Response to Chilling Stress. Int. J. Mol. Sci. 22, 11985
27. Małgorzata Rydzy, Michał Tracz, Piotr Kolesiński, Andrzej Szczepaniak (2021) Białka chaperonowe zaangażowane w proces biosyntezy Rubisco. Postepy Biochemii 67.
28. Karolina Wójtowicz, Aleksander Czogalla, Tomasz Trombik, Marcin Łukaszewicza (2021) Surfactin cyclic lipopeptides change the plasma membrane composition and lateral organization in mammalian cells. BBA-Biomembranes 1863, 183730.
29. Małgorzata Rydzy, Michał Tracz, Andrzej Szczepaniak, Joanna Grzyb (2021) Insights into the Structure of Rubisco from Dinoflagellates-in Silico Studies. Int. J. Mol. Sci. 22, 8524
30. Olga Raducka-Jaszul, Karolina Wójtowicz, Aleksander F. Sikorski, Giovanna Chimni, Yannick Hammon, Tomasz Trombik (2021) Molecular Diffusion of ABCA1 at the Cell Surface of Living Cells Assessed by svFCS. Membranes, 11, 298. 
31. Jakub Sławski, Rafał Białek, Gotard Burdziński, Krzysztof Gibasiewicz, Remigiusz Worch, Joanna Grzyb (2021) Competition between Photoinduced Electron Transfer and Resonance Energy Transfer in an Example of Substituted Cytochrome c–Quantum Dot Systems. J. Phys. Chem. B, 125, 3307–3320
32. Michał Tracz, Ireneusz Górniak, Andrzej Szczepaniak, Wojciech Białek (2021) E3 Ubiquitin Ligase SPL2 Is a Lanthanide-Binding Protein. Int. J. Mol. Sci. 22, 5712
33. Aleksandra Eckstein, Joanna Grzyb, Paweł Hermanowicz, Piotr Zgłobicki, Justyna Łabuz, Wojciech Strzałka, Dariusz Dziga, Agnieszka Katarzyna Banaś (2021) Arabidopsis Phototropins Participate in the Regulation of Dark-Induced Leaf Senescence. Int. J. Mol. Sci. 22, 1836.
34. Michał Tracz, Wojciech Białek (2021) Beyond K48 and K63: non-canonical protein ubiquitination. Cell. Mol. Biol. Lett. 26, 1. 
35. Katarzyna Gieczewska, Joanna Grzyb, Bioczujniki i bionanourządzenia – przyszłość czy ślepa uliczka? w: Technologie XXI wieku – aktualne problemy i nowe wyzwania. Wydawnictwo Naukowe TYGIEL sp. z o.o. 2020, str. 1159-182.
36. Sebastien Mailfert, Karolina Wojtowicz, Sophie Brustlein, Ewa Blaszczak, Nicolas Bertaux, Marcin Łukaszewicz, Didier Marguet, Tomasz Trombik (2020) Spot Variation Fluorescence Correlation Spectroscopy for Analysis of Molecular Diffusion at the Plasma Membrane of Living Cells. JoVE Journal, doi: 10.3791/61823
37. Ewa Maciaszczyk-Dziubinska, Anna Reymer, Nallani Vijay Kumar, Wojciech Białek, Katarzyna Mizio, Markus J Tamás, Robert Wysocki (2020) The ancillary N-terminal region of the yeast AP-1 transcription factor Yap8 contributes to its DNA binding specificity.  Nuc. Acids Res.  48, 5426–5441.
38. Ambroise Wu, Karolina Wójtowicz, Stephane Savary, Yannick Hamon, Tomasz Trombik (2020)  Do ABC transporters regulate plasma membrane organization? Cell. Mol. Biol. Lett. 25, 37.
39. Jakub Sławski, Joanna Grzyb (2019) Nanoparticles as energy donors and acceptors in bionanohybrid systems. Acta Biochim. Pol. 66, 469-481. 
40. Olga Sztatelman, Katarzyna Kopeć, Marta Pędziwiatr, Martyna Trojnar, Remigiusz Worch, Beata Wilegus-Kutrowska, Małgorzata Jemioła-Rzemińska, Agnieszka Bzowska, Joanna Grzyb (2019) Heterodimerizing helices as tools for nanoscale control of the organization of protein-protein and protein-quantum dots. Biochimie 167,93-105 
41. Katarzyna Kopeć, Marta Pędziwiatr, Dominik Gront, Olga Sztatelman, Jakub Sławski, Magdalena Łazicka, Remigiusz Worch, Katarzyna Zawada, Katerina Makarova, Marcin Nyk, Joanna Grzyb (2019) Comparison of α-Helix and β-Sheet Structure Adaptation to a Quantum Dot Geometry: Toward the Identification of an Optimal Motif for a Protein Nanoparticle Cover. ACS Omega. 4:13086-13099
42. Ambroise Wu, Ewa Grela, Karolina Wójtowicz, Nina Filipczak, Yannick Hammon, Rafał Luchowski, Wojciech Grudziński, Olga Raducka-Jaszul, Mariusz Gagoś, Andrzej Szczepaniak, Giovanna Chimini, Wiesław I. Gruszecki, Tomasz Trombik (2019) Cel. Mol. Life Sci. 76, 4979–4994
43. Magda A Antoniak, Joanna Grzyb, Marcin Nyk (2019) Preserved Two-photon Optical Properties of Hydrophilic Proteins-Conjugated Quantum Dots. J. Luminescence 209:57-60.
44. Paulina Piotrowska, Magdalena Łazicka, Adriana Palińska-Saadi, Bohdan Paterczyk, Łucja Kowalewska, Joanna Grzyb, Magdalena Maj-Żurawska, Maciej Garstka (2019) Electrochemical characterization of LHCII on graphite electrodes – Potential-dependent photoactivation and arrangement of complexes. Bioelectrochemistry 127, 37-48.
45. Aleksandra Eckstein, Joanna Grzyb, Paweł Hermanowicz, A. Katarzyna Banaś (2019) Acta Biochim. Pol. 66, 243-248.
46. Joanna Grzyb, Katarzyna Gieczewska, Justyna Łabuz, Olga Sztatelman (2018) Detailed characterization of Synechocystis PCC 6803 ferredoxin: NADP+ oxidoreductase interaction with model membranes. BBA-Biomembranes 1860:281-291.
47. Piotr Kolesiński, Małgorzata Rydzy, Andrzej Szczepaniak (2017) Is RAF1 protein from Synechocystis sp. PCC 6803 really needed in the cyanobacterial Rubisco assembly process? Photosynth. Res. 132:135-148.
48. Pawel Zatwarnicki, Jakub Barciszewski, Szymon Krzywda, Mariusz Jaskólski, Piotr Kolesiński, Andrzej Szczepaniak (2013) Cytochrome c6B of Synechococcus sp. WH 8102 – crystal structure and basic properties of novel c6-like family representative.  Biochem. Biophys. Res. Commun. 443:1131–1135.
49. Piotr Kolesiński, Przemyslaw Golik, Przemyslaw Grudnik, Janusz Piechota, Michal Markiewicz, Miroslaw Tarnawski, Grzegorz Dubin, Andrzej Szczepaniak (2013) Insights into eukaryotic Rubisco assembly – Crystal structures of RbcX chaperones from Arabidopsis thaliana. Biochim. Biophys. Acta 1830: 2899-2906.
50. Piotr Kolesiński, Janusz Piechota, Andrzej Szczepaniak (2011) Initial Characteristic of RbcX proteins from Arabidopsis thaliana. Plant. Mol. Biol. 77: 447-459.
51. Miroslaw Tarnawski, Szymon Krzywda, Wojciech Białek, Mariusz Jaskólski and Andrzej Szczepaniak (2011) Structure of the RuBisCO chaperone RbcX from the thermophilic cyanobacterium Thermosynechococcus elongatus. Acta Crystallographica Section F67, 851-857.
52. Króliczewski J., Gubernator B., Roegner M., Szczepaniak A. (2011)  On the mode of integration of the thylakoid membrane protein cytochrome b6 into cytoplasmic membrane of Escherichia coli. Acta Biochem. Pol. 58(3):335-343.
53. Białek W, Krzywda S, Jaskólski M, Szczepaniak A. (2009) Atomic-resolution of reduced cyanobacterial cytochrome c6 with an unusual sequence insertion. FEBS J. 276: 4426-4436.
54. Tarnawski M, Gubernator B, Kolesinski P, Szczepaniak A. (2008) Expression and initial characterization of a recombinant RbcX protein from Thermosynechococcus elongatus BP-1, the role of RbcX in RuBisCO assembly. Acta Biochem. Pol. 55
55. Tarnawski M, Krzywda S, Szczepaniak A, Jaskolski M. (2008) Rational `correction` of the amino-acid seqence of RbcX protein from the thermophilic cyanobacterium Thermosynechococcus elongatus dramatically improves crystallization. Acta Cryst. F64: 870-874.
56. Bialek W, Nelson M, Tamiola K, Kallas T, Szczepaniak A. (2008) Deeply Branching c6-like Cytochromem of Cyanobacteria. Biochemistry 47: 5515-5522.
57. Gubernator B, Bartoszewski R, Króliczewski J, Wildner G, Szczepaniak A. (2008) Ribulose-1,5-bisphosphate carboxylase/oxygenase from thermophilic cyanobacterium Thermosynechococcus elongatus. Photosynth. Res. 95: 101-109.
58. Gubernator B, Króliczewski J, Kallas T, Szczepaniak A. (2006) Iron-sulfur cluster reconstitution of spinach chloroplast Rieske protein requires a partially prefolded apoprotein. Biochim. Biophys. Acta 1764: 735-742.
59. Króliczewski J.,Hombek-Urban K., Szczepaniak A. (2005) The integration of the thylakoid membrane protein cytochrome b6 in the cytoplasmic membrane of Escherichia coil. Biochemistry 44: 7570-7576.
60. Gubernator B., Seidler A., Rogner M., Szczepaniak A. (2003) Overexpression and Reconstitution of a Rieske Iron-Sulfur Protein from the Higher Plant. Protein Expr Purif 29: 8-14.
61. Wildner G., Schlitter J., Szczepaniak A., Bartoszewski R. (2002). Rubisco of a thermophilic cyanobacterium Thermosynechococcus elonogatus. W: Recent Research Development in Biotechnology and Bioengeneering, Special issue: Biotechnology and Bioengeneering of CO2 fixation. (S.J. Bhattacharya, T. Mal, S. Chakrabarti, eds.,):73-88.
62. Króliczewski j., Szczepaniak A. (2002) In vitro reconstitution of the spinach chloroplast cytochrome b6 protein from a fusion protein expressed in Escherichia coli. Biochim. Biophys. Acta 1598: 177-184.
63. Martinez S.E., Huang D., Szczepaniak A., Cramer W.A., Smith J.L. (1994) Crystal Structure of the Chloroplast Cytochrome f Reveals a Novel Cytochrome Fold and Unexpected Heme Ligation. Structure 2, 95-105